PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000269641
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 253aa    MW: 28566.9 Da    PI: 10.0402
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000269641genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000154365123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+  F r  nL+ H r H
  MDP0000269641 43 FVCEICNNGFQRDQNLQLHRRGH 65
                   89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.62E-64265No hitNo description
Gene3DG3DSA:3.30.160.607.6E-44365IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.184365IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SuperFamilySSF576672.62E-6114139No hitNo description
SuperFamilySSF534745.91E-6167235IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18208.9E-7196235IPR029058Alpha/Beta hydrolase fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MPRLTLKFGV VEMQTMVKKY QQRFSKADVI ALSLTTLLAT NHFVCEICNN GFQRDQNLQL  60
HRRGHNLPWK LQQRSGKEVK KRVYVCPETS CVHHDPSRAL SDLTGIKKCF CKKHGEKKWK  120
CDKCSKKYAV QSDWNAHPKI CGTREYKCDC GTLSSRRDSF ITHRVFFSHL LSSLIRFTSD  180
GEQKINPKIN GVDGSEANPL NPTSYSILHL VGDLVGLLDH FGGQQAFVVG HGHGALGKEK  240
GDNQKKAKAN LCR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469451.17e-90PREDICTED: protein indeterminate-domain 2-like isoform X1
RefseqXP_012469452.16e-90PREDICTED: protein indeterminate-domain 2-like isoform X2
SwissprotQ9SCQ66e-90IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A0B0PEB21e-90A0A0B0PEB2_G
STRINGPOPTR_0005s12710.12e-87(Populus trichocarpa)
STRINGPOPTR_0007s12520.13e-87(Populus trichocarpa)
STRINGAT3G50700.11e-87(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.19e-72indeterminate(ID)-domain 2